ABOUT THIS RECORDspecies: Peromyscus polionotus subgriseus
miRNA family: mir-3556
source: miRNEST
Taxonomy by NCBI:
Peromyscus polionotus subgriseus Peromyscus polionotus Peromyscus Neotominae Cricetidae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACCGATTTCAAATGGTGCTAG miRNA* GAACACCAGGAGAAATCGGTCA mismatches: 4 bulges: 1 |
pre-miRNA
TCCTACATCATAACCGATTTCAAATGGTGCTAGACAAAAACAGACTCTGAACACCAGGAGAAATCGGTCAGCCTGTGT
dot-bracket secondary structure
)..((((.....(((((((((...(((((.((((...........))))..)))))...))))))))).....)))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCCTACATCATAACCGATTTCAAATGGTGCTAGACAAAAACAGACTCTGAACACCAGGAGAAATCGGTCAGCCTGTGT
dot-bracket secondary structure
)..((((.....(((((((((...(((((.((((...........))))..)))))...))))))))).....)))).
SIMILARITIES| miRBase eca-mir-29c: 2.0E-38 PMRD no hits microPC no hits | UniProt no hits RFAM 9mir-29: 5.0E-18 | most similar mature miRNAs |
Identical with: eca-mir-29c from miRBase (MNEST026973), mml-mir-29c from miRBase , ppy-mir-29c from miRBase , ssc-mir-29c from miRBase , ptr-mir-29c from miRBase , rno-mir-3556b from miRBase , cfa-mir-29c-1 from miRBase , cfa-mir-29c-2 from miRBase , bta-mir-29c from miRBase , rno-mir-29c from miRBase , hsa-mir-29c from miRBase , mmu-mir-29c from miRBase |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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