miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST009833
species: Calanus finmarchicus
miRNA family: miR-1777a
source: miRNEST

Taxonomy by NCBI:
Calanus finmarchicus Calanus Calanidae Calanoida Gymnoplea Neocopepoda Copepoda Maxillopoda Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGGGGGCTGGGTGGGGAGGGT

miRNA*
 CATTTCCTATTCACTCCTTTG

mismatches: 1
bulges: 2
View larger
pre-miRNA
 CAGGCTGTTATCTTCTGGAGTGAGACCACAGCTAGTGGTGCTGGGGGCTGGGTGGGGAGGGTTCCGGTGTGCCAGGGATGTGGACAAAACCAAGTATGAT
GTCACTGTGGTGTCACCAAGGAACCATTTCCTATTCACTCCTTTGCTTCCTTCCACCACTGTGGGCACTTTGGAGTTCAGATG

dot-bracket secondary structure
....(((.....((((((((((...((((((...((((.((.(((((.((((((((((((((((((((((((((.((.....((((.............)
))).)).))))).))))..)))))).))))))))))))))))..))......))))..)))))).))))))))))..)))...


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|Q55CD9|NDH_DICDI: 0.00000002

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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