ABOUT THIS RECORDspecies: Oncorhynchus nerka
miRNA family: miR-2329
source: miRNEST
Taxonomy by NCBI:
Oncorhynchus nerka Oncorhynchus Salmoninae Salmonidae Salmonoidei Salmoniformes Protacanthopterygii Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTTAACAGATCACATCACAG miRNA* ATGGTAATGTAGAATGTTAATTCA mismatches: 4 bulges: 2 |
pre-miRNA
TAAATCATTTCCATGGTAATGTAGAATGTTAATTCAAATGATGCTAACTGATGTGGCTCTTACAATGGAATGTATTTCTTTTGTCATGTCAGTTGAGTTG
ACTTAACAGATCACATCACAGATTGATGGC
dot-bracket secondary structure
...((((..((....((.((((.((.((((((.((((.......(((((((((((((.........((((.....))))...)))))))))))))..)))
).))))))..)))))).)).)).))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TAAATCATTTCCATGGTAATGTAGAATGTTAATTCAAATGATGCTAACTGATGTGGCTCTTACAATGGAATGTATTTCTTTTGTCATGTCAGTTGAGTTG
ACTTAACAGATCACATCACAGATTGATGGC
dot-bracket secondary structure
...((((..((....((.((((.((.((((((.((((.......(((((((((((((.........((((.....))))...)))))))))))))..)))
).))))))..)))))).)).)).))))...
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
