ABOUT THIS RECORDspecies: Coregonus clupeaformis
miRNA family: miR-1968
source: miRNEST
Taxonomy by NCBI:
Coregonus clupeaformis Coregonus Coregoninae Salmonidae Salmonoidei Salmoniformes Protacanthopterygii Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCAGCTGTTAAGAATGGAGG miRNA* ACATTCCTACTGGCTGTCAGC mismatches: 3 bulges: 2 |
pre-miRNA
GTTCCTGCATCATGGCGTTGGGACCATCCTGGTCTTCATTGCCTCTGTTGTTGCAGCTGTTAAGAATGGAGGTGTGTCTGAACTAGTAGCTGGTTCGGTA
TTTGGCTTCATCGCCACATTCCTACTGGCTGTCAGCATATGGACATCCTATAAGGCCACATGTGGTTCCCAGCCAACCAGTGCT
dot-bracket secondary structure
......((((..((((...((((((((..(((((((...((((.....(((((((((((.((.(((((..((((((.(((((((((...)))))))))..
........)).)))).))))).)).)))))).)))))...)).))......)))))))...))))))))..))))....)))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GTTCCTGCATCATGGCGTTGGGACCATCCTGGTCTTCATTGCCTCTGTTGTTGCAGCTGTTAAGAATGGAGGTGTGTCTGAACTAGTAGCTGGTTCGGTA
TTTGGCTTCATCGCCACATTCCTACTGGCTGTCAGCATATGGACATCCTATAAGGCCACATGTGGTTCCCAGCCAACCAGTGCT
dot-bracket secondary structure
......((((..((((...((((((((..(((((((...((((.....(((((((((((.((.(((((..((((((.(((((((((...)))))))))..
........)).)))).))))).)).)))))).)))))...)).))......)))))))...))))))))..))))....)))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q96FZ5|CKLF7_HUMAN: 0.000000000003 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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