ABOUT THIS RECORDspecies: Populus trichocarpa x Populus deltoides
miRNA family: MIRf755
source: miRNEST
Taxonomy by NCBI:
Populus trichocarpa x Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGTCGAGCAGGAGCTCGAGCT miRNA* CTTGGGTCTCTTGTGAAGACCGC mismatches: 2 bulges: 2 |
pre-miRNA
TAGACACCTTTGGTCACCTTAGCTTGGGTCTCTTGTGAAGACCGCTGCTCACATTTCTTCTATCAGGTTGTCGGGTTACTGGCCGAGCTGGCGGCCTAGC
TGATGGTCGAGCAGGAGCTCGAGCTGGTGGCCGAGCTGATGGTC
dot-bracket secondary structure
..(((...((((((((((..((((((((.(((((((...(((((..(((.(((..(((......))).))).(((((.(((((...))))).))))))))
...)))))..)))))))))))))))))))))))))......)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TAGACACCTTTGGTCACCTTAGCTTGGGTCTCTTGTGAAGACCGCTGCTCACATTTCTTCTATCAGGTTGTCGGGTTACTGGCCGAGCTGGCGGCCTAGC
TGATGGTCGAGCAGGAGCTCGAGCTGGTGGCCGAGCTGATGGTC
dot-bracket secondary structure
..(((...((((((((((..((((((((.(((((((...(((((..(((.(((..(((......))).))).(((((.(((((...))))).))))))))
...)))))..)))))))))))))))))))))))))......)))
SIMILARITIES| miRBase no hits PMRD ptc-miRf10177-akr: 1e-66 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: ptc-miRf10177-akr from PMRD (MNEST051999) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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