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ABOUT THIS RECORD

ID: MNEST009965
species: Populus trichocarpa x Populus deltoides
miRNA family: MIRf11
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa x Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTTCCCGGAAATCACTTTCCG

miRNA*
AAAAGTGAATTCCGGGAAACA

mismatches: 2
bulges: 0

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pre-miRNA
TTGGAAAGTGGTTTCCCGGAAATCACTTTCCGGAAAACAAACACAGCCAAAAGGAAAAACACTTTCCTGAAAACCAAACCAAATTCAAAAAGTGTTTCCG
TTGACTGGAAAGTGTTTTCCGTTGACCAACTTTCCTAATAGCAAATAAACACAGGAAAGTTTGGAAAGTGGTTTCCCGAAAAGTGAATTCCGGGAAACAA
ACATGGC


dot-bracket secondary structure
..(((((((((((((...)))))))))))))((((((((....(((.(((..((((..(((((((..((((............)))).))))))))))).
))).))).....)))))))).....(((((((((((................))))))).))))...((.((((((((.((......)).))))))))..
)).....



SIMILARITIES
miRBase no hits

PMRD ptc-miRf10296-akr: 2e-41

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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