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ABOUT THIS RECORD
ID:
MNEST009965
species:
Populus trichocarpa x Populus deltoides
miRNA family:
MIRf11
source:
miRNEST
Taxonomy by NCBI:
Populus trichocarpa x Populus deltoides
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTTCCCGGAAATCACTTTCCG
miRNA*
AAAAGTGAATTCCGGGAAACA
mismatches:
2
bulges:
0
View larger
pre-miRNA
TTGGAAAGTGG
TTTCCCGGAAATCACTTTCCG
GAAAACAAACACAGCCAAAAGGAAAAACACTTTCCTGAAAACCAAACCAAATTCAAAAAGTGTTTCCG
TTGACTGGAAAGTGTTTTCCGTTGACCAACTTTCCTAATAGCAAATAAACACAGGAAAGTTTGGAAAGTGGTTTCCCG
AAAAGTGAATTCCGGGAAACA
A
ACATGGC
dot-bracket secondary structure
..(((((((((
((((...)))))))))))))(
(((((((....(((.(((..((((..(((((((..((((............)))).))))))))))).
))).))).....)))))))).....(((((((((((................))))))).))))...((.((((((((
.((......)).)))))))).
.
)).....
SIMILARITIES
miRBase
no hits
PMRD
ptc-miRf10296-akr
:
2e-41
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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