ABOUT THIS RECORDspecies: Populus trichocarpa x Populus deltoides
miRNA family: miR168a
source: miRNEST
Taxonomy by NCBI:
Populus trichocarpa x Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCCGCCTTGCATCAACTGAAT miRNA* TCGCTTGGTGCAGGTCGGGAA mismatches: 2 bulges: 0 |
pre-miRNA
ATTTTAGTTACCGGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTGATTCGGCGATTTGATTGCCAGATGGCTAAACACGATTGGCTGTGAGGCAAAT
TATAAAAAGAAAGAGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGACCGCGGTGAAGACGA
dot-bracket secondary structure
)......((((((.((((((((.(((((.((((((((((.(((((.(((((((.....(((..(((((..((((((((......))))))))..)))))..
.....)))......))))))).))))).)))))))))).))))).))))))))))))))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATTTTAGTTACCGGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTGATTCGGCGATTTGATTGCCAGATGGCTAAACACGATTGGCTGTGAGGCAAAT
TATAAAAAGAAAGAGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGACCGCGGTGAAGACGA
dot-bracket secondary structure
)......((((((.((((((((.(((((.((((((((((.(((((.(((((((.....(((..(((((..((((((((......))))))))..)))))..
.....)))......))))))).))))).)))))))))).))))).))))))))))))))......
SIMILARITIES| miRBase ptc-MIR168b: 3.0E-73 PMRD ptc-miR168b: 3.0E-73 microPC miR168: 2.0E-62 | UniProt no hits RFAM 8MIR168: 3.0E-83 | most similar mature miRNAs |
Identical with: ptc-miR168b from PMRD (MNEST051651), miR168 from microPC , ptc-MIR168b from miRBase , miR168 from microPC |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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