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ABOUT THIS RECORD

ID: MNEST009966
species: Populus trichocarpa x Populus deltoides
miRNA family: miR168a
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa x Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CCCGCCTTGCATCAACTGAAT

miRNA*
TCGCTTGGTGCAGGTCGGGAA

mismatches: 2
bulges: 0

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pre-miRNA
TTTTAGTTACCGGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTGATTCGGCGATTTGATTGCCAGATGGCTAAACACGATTGGCTGTGAGGCAAAT
TATAAAAAGAAAGAGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGACCGCGGTGAAGACGA


dot-bracket secondary structure
......((((((.((((((((.(((((.((((((((((.(((((.(((((((.....(((..(((((..((((((((......))))))))..)))))..
.....)))......))))))).))))).)))))))))).))))).))))))))))))))......



SIMILARITIES
miRBase ptc-MIR168b: 3e-73

PMRD ptc-miR168b: 3e-73

microPC miR168: 2e-62
UniProt no hits

RFAM MIR168: 3e-83
most similar mature miRNAs

Identical with: ptc-miR168b from PMRD (MNEST051651)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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