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ABOUT THIS RECORD

ID: MNEST009969
species: Populus trichocarpa x Populus deltoides
miRNA family: MIRf1080
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa x Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CCCTAATCAGGGCACTGCAAT

miRNA*
 TGCAGTGCCTTGATTTGGGCT

mismatches: 1
bulges: 0
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pre-miRNA
 GTCTCTCGTGAACGAAGGAGGCCCTAATCAGGGCACTGCAATTCTAAATGTCTGTTGGCAAGTGGCGATGCCAGACGTTTGAAATTTACATCATTTATTA
GTCAGAATTGCAGTGCCTTGATTTGGGCTTTGTTTGTTCCTGTAACC

dot-bracket secondary structure
......((.(((((((.(((((((.(((((((((((((((((((((((((((...(((((........))))))))))))....................
...)))))))))))))))))))).))))))).))))))).)).....


SIMILARITIES
miRBase ptc-MIR1447: 8e-55

PMRD ptc-miRf11238-akr: 2e-58

microPC miR1447: 1e-50		UniProt no hits

RFAM no hits		most similar mature miRNAs

Identical with: miR1447 from microPC (MNEST045142)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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