ABOUT THIS RECORDspecies: Populus trichocarpa x Populus deltoides
miRNA family: MIR393
source: miRNEST
Taxonomy by NCBI:
Populus trichocarpa x Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCAAAGGGATCGCATTGATC miRNA* TCATGCGATCCCTTAGGAAT mismatches: 1 bulges: 1 |
pre-miRNA
TTCTTAGTGCAGCTGGAGTGTTCCAAAGGGATCGCATTGATCTAATGACTCTCGATGTCTAAATCATATTAATGTTTAGTTTTTTCGTTGGATCATGCGA
TCCCTTAGGAATTTTCCAGCATTCAGCTCT
dot-bracket secondary structure
...........(((((((.(((((.((((((((((((.((((((((((.....((...(((((.(((....)))))))).))..))))))))))))))))
)))))).))))).)))))))..........
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTCTTAGTGCAGCTGGAGTGTTCCAAAGGGATCGCATTGATCTAATGACTCTCGATGTCTAAATCATATTAATGTTTAGTTTTTTCGTTGGATCATGCGA
TCCCTTAGGAATTTTCCAGCATTCAGCTCT
dot-bracket secondary structure
...........(((((((.(((((.((((((((((((.((((((((((.....((...(((((.(((....)))))))).))..))))))))))))))))
)))))).))))).)))))))..........
SIMILARITIES| miRBase ptc-MIR393c: 5e-56 PMRD ptc-miR393c: 5e-56 microPC miR393: 3e-45 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: ptc-MIR393c from miRBase (MNEST041419) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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