ABOUT THIS RECORDspecies: Populus trichocarpa x Populus deltoides
miRNA family: MIRf1049
source: miRNEST
Taxonomy by NCBI:
Populus trichocarpa x Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCCCAGGATCATGTCATGGTG miRNA* TCATGACAGGGAATTGGGAGT mismatches: 3 bulges: 2 |
pre-miRNA
TACATCGTAGTACATGTTCATGCATGTACCAGCCCAGGATCATGTCATGGTGTGTGCATATGCATGGATCTGGTATACATGCATGCATACATGTCTGTAG
ATATCGTCACATCATGACAGGGAATTGGGAGTAGGCAGATTTTTAGAATGCCCATTGTTG
dot-bracket secondary structure
.........((((((((....))))))))...(((((..((.((((((((((((((((..((((((...........)))))))))).(((((((....)
)))).))))))))))))))..)).)))))....((((..((....)).))))........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TACATCGTAGTACATGTTCATGCATGTACCAGCCCAGGATCATGTCATGGTGTGTGCATATGCATGGATCTGGTATACATGCATGCATACATGTCTGTAG
ATATCGTCACATCATGACAGGGAATTGGGAGTAGGCAGATTTTTAGAATGCCCATTGTTG
dot-bracket secondary structure
.........((((((((....))))))))...(((((..((.((((((((((((((((..((((((...........)))))))))).(((((((....)
)))).))))))))))))))..)).)))))....((((..((....)).))))........
SIMILARITIES| miRBase no hits PMRD ptc-miRf11143-akr: 2e-58 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
