ABOUT THIS RECORDspecies: Branchiostoma floridae
miRNA family: mir-33
source: miRBase, original name: bfl-mir-33-1 (MI0010525)
Taxonomy by NCBI:
Branchiostoma floridae Branchiostoma Branchiostomidae Cephalochordata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTGCATTGTAGTTGCATTGCAT miRNA* GCAATGTAACAGCAGTGCAGCT mismatches: 2 bulges: 0 |
pre-miRNA
GGCTGAGGTGCATTGTAGTTGCATTGCATGTGCACAAAGGAAGTGCAATGTAACAGCAGTGCAGCTCAGACATGGTTGCAATG
dot-bracket secondary structure
).(((((.((((((((.((((((((((((.(.(.....).).)))))))))))).)))))))).)))))..............
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, cloned
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
[2] Dai Z, Chen Z, Ye H, Zhou L, Cao L, Wang Y, Peng S, Chen L, Evol Dev. 11:41-49(2009)., "Characterization of microRNAs in cephalochordates reveals a correlation between microRNA repertoire homology and morphological similarity in chordate evolution"
GGCTGAGGTGCATTGTAGTTGCATTGCATGTGCACAAAGGAAGTGCAATGTAACAGCAGTGCAGCTCAGACATGGTTGCAATG
dot-bracket secondary structure
).(((((.((((((((.((((((((((((.(.(.....).).)))))))))))).)))))))).)))))..............
SIMILARITIES| miRBase bfl-mir-33-2: 3.0E-16 PMRD no hits microPC no hits | UniProt no hits RFAM 3mir-33: 4.0E-31 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, cloned
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
[2] Dai Z, Chen Z, Ye H, Zhou L, Cao L, Wang Y, Peng S, Chen L, Evol Dev. 11:41-49(2009)., "Characterization of microRNAs in cephalochordates reveals a correlation between microRNA repertoire homology and morphological similarity in chordate evolution"
