ABOUT THIS RECORDspecies: Branchiostoma floridae
miRNA family: mir-219
source: miRBase, original name: bfl-mir-219 (MI0010527)
Taxonomy by NCBI:
Branchiostoma floridae Branchiostoma Branchiostomidae Cephalochordata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGTCCAAACGCAATTCT miRNA* AACTGCGCTGGACATCAGC mismatches: 2 bulges: 2 |
pre-miRNA
CCAGTGCTGATTGTCCAAACGCAATTCTTGTTGACCTTTGAACCAAGAACTGCGCTGGACATCAGCAATTGACGCTGCCTAC
dot-bracket secondary structure
.((((((((((.(((((..((((.((((((((........)).)))))).)))).))))))))))).))))...........
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
[2] Dai Z, Chen Z, Ye H, Zhou L, Cao L, Wang Y, Peng S, Chen L, Evol Dev. 11:41-49(2009)., "Characterization of microRNAs in cephalochordates reveals a correlation between microRNA repertoire homology and morphological similarity in chordate evolution"
CCAGTGCTGATTGTCCAAACGCAATTCTTGTTGACCTTTGAACCAAGAACTGCGCTGGACATCAGCAATTGACGCTGCCTAC
dot-bracket secondary structure
.((((((((((.(((((..((((.((((((((........)).)))))).)))).))))))))))).))))...........
SIMILARITIES| miRBase dre-mir-219-3: 0.000000004 PMRD no hits microPC no hits | UniProt no hits RFAM mir-219: 9e-32 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
[2] Dai Z, Chen Z, Ye H, Zhou L, Cao L, Wang Y, Peng S, Chen L, Evol Dev. 11:41-49(2009)., "Characterization of microRNAs in cephalochordates reveals a correlation between microRNA repertoire homology and morphological similarity in chordate evolution"
