ABOUT THIS RECORDspecies: Branchiostoma floridae
miRNA family: mir-375
source: miRBase, original name: bfl-mir-375 (MI0010045)
Taxonomy by NCBI:
Branchiostoma floridae Branchiostoma Branchiostomidae Cephalochordata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTTCGTTCGGCTCGCGTTATCT miRNA* ACAGGCCGAGCCTGGCGAGCAAA mismatches: 3 bulges: 2 |
pre-miRNA
TGCCACATCCCTGCCCAGACAGGCCGAGCCTGGCGAGCAAAGCTGTGTCTAAACTTAACGTTTTGTTCGTTCGGCTCGCGTTATCTTGGCATGGGCTATCG
T
dot-bracket secondary structure
).......(((((((.(((..(((((((((..(((((((((((.((...........)))))))))))))..)))))).))).))).)))).)))......
.
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
TGCCACATCCCTGCCCAGACAGGCCGAGCCTGGCGAGCAAAGCTGTGTCTAAACTTAACGTTTTGTTCGTTCGGCTCGCGTTATCTTGGCATGGGCTATCG
T
dot-bracket secondary structure
).......(((((((.(((..(((((((((..(((((((((((.((...........)))))))))))))..)))))).))).))).)))).)))......
.
SIMILARITIES| miRBase xtr-mir-375: 2.0E-8 PMRD no hits microPC no hits | UniProt no hits RFAM 5mir-375: 3.0E-35 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
