ABOUT THIS RECORDspecies: Ciona intestinalis
miRNA family: let-7
source: miRBase, original name: cin-let-7b (MI0007151)
Taxonomy by NCBI:
Ciona intestinalis Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGGTAGTAGGTTATGTTGTT miRNA* TGGAGATACACCATGACCTTCTAACCTCTGC mismatches: 3 bulges: 9 |
pre-miRNA
AGGTACACCTGCTGTTGAGGTAGTAGGTTATGTTGTTGCACATAATACTGCATTGGAGATACACCATGACCTTCTAACCTCTGCACCATGTCTATCACTT
TCAACATGG
dot-bracket secondary structure
.((((.((.((.(((.(((((((.((((((((.(((((((........))))........))).)))))))).)).))))).))).)).)).))))....
.........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Hendrix D, Levine M, Shi W, Genome Biol. 11:R39(2010)., "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data"
[2] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"
AGGTACACCTGCTGTTGAGGTAGTAGGTTATGTTGTTGCACATAATACTGCATTGGAGATACACCATGACCTTCTAACCTCTGCACCATGTCTATCACTT
TCAACATGG
dot-bracket secondary structure
.((((.((.((.(((.(((((((.((((((((.(((((((........))))........))).)))))))).)).))))).))).)).)).))))....
.........
SIMILARITIES| miRBase csa-let-7b: 0.00000002 PMRD no hits microPC no hits | UniProt no hits RFAM let-7: 4e-38 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Hendrix D, Levine M, Shi W, Genome Biol. 11:R39(2010)., "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data"
[2] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"
