ABOUT THIS RECORDspecies: Ciona intestinalis
miRNA family: mir-7
source: miRBase, original name: cin-mir-7 (MI0007155)
Taxonomy by NCBI:
Ciona intestinalis Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAAGACTAGTGATTTTGTTG miRNA* ACAACAATCTATGGTCTCCTGC mismatches: 3 bulges: 2 |
pre-miRNA
ATATCCGCACCCGGTTGGAAGACTAGTGATTTTGTTGTTATAGCAACAACAATCTATGGTCTCCTGCACGGAAGTGGA
dot-bracket secondary structure
...(((((..(((((.(((.(((((..(((((((((((....))))))).))))..)))))))).)).)))..)))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Hendrix D, Levine M, Shi W, Genome Biol. 11:R39(2010)., "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data"
[2] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"
ATATCCGCACCCGGTTGGAAGACTAGTGATTTTGTTGTTATAGCAACAACAATCTATGGTCTCCTGCACGGAAGTGGA
dot-bracket secondary structure
...(((((..(((((.(((.(((((..(((((((((((....))))))).))))..)))))))).)).)))..)))))
SIMILARITIES| miRBase csa-mir-7: 0.00000000002 PMRD no hits microPC no hits | UniProt no hits RFAM mir-7: 4e-37 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Hendrix D, Levine M, Shi W, Genome Biol. 11:R39(2010)., "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data"
[2] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"
