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ABOUT THIS RECORD
ID:
MNEST024814
species:
Ciona intestinalis
miRNA family:
mir-31
source:
miRBase, original name:
cin-mir-31
(
MI0007156
)
Taxonomy by NCBI:
Ciona intestinalis
Ciona
Cionidae
Phlebobranchia
Enterogona
Ascidiacea
Tunicata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGGCAAGATGTTGGCATAGCTA
miRNA*
GTGTGCTAATATCTAGCTTTG
mismatches:
2
bulges:
1
View larger
pre-miRNA
ATGTAACTGGTTCTA
TGGCAAGATGTTGGCATAGCTA
TTTCACATGATGTGATATA
GTGTGCTAATATCTAGCTTTG
GTACTAGCTTAAGAAATCAACGC
AA
dot-bracket secondary structure
...((((((((.(((
.(((.(((((((((((((.(((
(.((((.....)))).)))
)))))))))))))).))).))
).))))).)))............
..
SIMILARITIES
miRBase
csa-mir-31
:
0.00000008
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-31: 5e-40
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
Northern, Solexa
references
[
1
] Norden-Krichmar TM, Holtz J, Pasquinelli AE, Gaasterland T,
BMC Genomics. 8:445(2007).
,
"Computational prediction and experimental validation of Ciona intestinalis microRNA genes"
[
2
] Hendrix D, Levine M, Shi W,
Genome Biol. 11:R39(2010).
,
"miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data"
[
3
] Fu X, Adamski M, Thompson EM,
Mol Biol Evol. 25:1067-1080(2008).
,
"Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"