ABOUT THIS RECORDspecies: Ciona intestinalis
miRNA family: mir-33
source: miRBase, original name: cin-mir-33 (MI0007157)
Taxonomy by NCBI:
Ciona intestinalis Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTGCATTGTAGTTGCATTG miRNA* ATGTGACAACAATACAACC mismatches: 5 bulges: 0 |
pre-miRNA
TGGTAGTTTTCCCTTGTGCATTGTAGTTGCATTGCACTGTTGCATTGTGGGTAATGTGACAACAATACAACCGGGATTTCTGCACAGTCATCATAAATTT
G
dot-bracket secondary structure
((((((...((((...((.(((((.((..((((((.(..(......)..)))))))..)).))))).))...))))...)))).))..............
.
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Hendrix D, Levine M, Shi W, Genome Biol. 11:R39(2010)., "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data"
[2] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"
TGGTAGTTTTCCCTTGTGCATTGTAGTTGCATTGCACTGTTGCATTGTGGGTAATGTGACAACAATACAACCGGGATTTCTGCACAGTCATCATAAATTT
G
dot-bracket secondary structure
((((((...((((...((.(((((.((..((((((.(..(......)..)))))))..)).))))).))...))))...)))).))..............
.
SIMILARITIES| miRBase aae-mir-33: 0.000001 PMRD no hits microPC no hits | UniProt no hits RFAM mir-33: 7e-30 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Hendrix D, Levine M, Shi W, Genome Biol. 11:R39(2010)., "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data"
[2] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"
