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ABOUT THIS RECORD
ID:
MNEST024817
species:
Ciona intestinalis
source:
miRBase, original name:
cin-mir-78
(
MI0007159
)
Taxonomy by NCBI:
Ciona intestinalis
Ciona
Cionidae
Phlebobranchia
Enterogona
Ascidiacea
Tunicata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGGAGGCCTGGTTGTTTCCTG
miRNA*
GGACACTTATCGGGCATCAAGT
mismatches:
6
bulges:
1
View larger
pre-miRNA
ATTAGATGTTGAGAA
GGACACTTATCGGGCATCAAGT
TTGTGATGAACAGCGTCATGGATGAAAC
TGGAGGCCTGGTTGTTTCCTG
TATAGTTGATAATG
G
dot-bracket secondary structure
(((((.(((.....(
(((.((..(((((((.((..((
(..(((((.....)))))..))).....
..)).))))))).)).)))).
.))).)))))....
.
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Fu X, Adamski M, Thompson EM,
Mol Biol Evol. 25:1067-1080(2008).
,
"Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"