ABOUT THIS RECORDspecies: Ciona intestinalis
miRNA family: mir-133
source: miRBase, original name: cin-mir-133 (MI0007167)
Taxonomy by NCBI:
Ciona intestinalis Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGTCCCCTTCAACCAGCTG miRNA* GTTGGTAAAGTGGAATCAAAC mismatches: 3 bulges: 2 |
pre-miRNA
AGAAAACATTGCGGGTGTCGGTCGTTGGTAAAGTGGAATCAAACCTTACGGTTTTAGTCCATGGTTTGGTCCCCTTCAACCAGCTGCTGCTACCACGCAC
A
dot-bracket secondary structure
.........((((((((.((((.((((((.(((.((.((((((((....((.......))..)))))))).)))))..)))))).)))).)))).)))).
.
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Hendrix D, Levine M, Shi W, Genome Biol. 11:R39(2010)., "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data"
[2] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"
AGAAAACATTGCGGGTGTCGGTCGTTGGTAAAGTGGAATCAAACCTTACGGTTTTAGTCCATGGTTTGGTCCCCTTCAACCAGCTGCTGCTACCACGCAC
A
dot-bracket secondary structure
.........((((((((.((((.((((((.(((.((.((((((((....((.......))..)))))))).)))))..)))))).)))).)))).)))).
.
SIMILARITIES| miRBase csa-mir-133: 0.0000003 PMRD no hits microPC no hits | UniProt no hits RFAM mir-133: 6e-46 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Hendrix D, Levine M, Shi W, Genome Biol. 11:R39(2010)., "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data"
[2] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"
