ABOUT THIS RECORDspecies: Ciona intestinalis
source: miRBase, original name: cin-mir-184 (MI0007173)
Taxonomy by NCBI:
Ciona intestinalis Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGACGGAGAACTGATAAGGGC miRNA* ACTTGCCACTTCTTCGCTTTCCATC mismatches: 4 bulges: 3 |
pre-miRNA
GCGTAATAGAACTTGCCACTTCTTCGCTTTCCATCATTTTGGGGTTAAATCACCCAAGCCATTGATGGACGGAGAACTGATAAGGGCTCTTGCGTTGGTC
AA
dot-bracket secondary structure
((((((.((..((((.((.(((((((...(((((((.((((((.........))))))....)))))))))))))).)).))))..)).)))))).....
..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Hendrix D, Levine M, Shi W, Genome Biol. 11:R39(2010)., "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data"
[2] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"
GCGTAATAGAACTTGCCACTTCTTCGCTTTCCATCATTTTGGGGTTAAATCACCCAAGCCATTGATGGACGGAGAACTGATAAGGGCTCTTGCGTTGGTC
AA
dot-bracket secondary structure
((((((.((..((((.((.(((((((...(((((((.((((((.........))))))....)))))))))))))).)).))))..)).)))))).....
..
SIMILARITIES| miRBase dan-mir-184: 0.000001 PMRD no hits microPC no hits | UniProt no hits RFAM mir-184: 6e-49 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Hendrix D, Levine M, Shi W, Genome Biol. 11:R39(2010)., "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data"
[2] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"
