ABOUT THIS RECORDspecies: Ciona intestinalis
source: miRBase, original name: cin-mir-199 (MI0007174)
Taxonomy by NCBI:
Ciona intestinalis Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACAGTAGTCTGCACATTGGGTG miRNA* CACCTGCAGCAACTTTGC mismatches: 3 bulges: 6 |
pre-miRNA
TTGATAGGACTTGATGTGGCGGTAAAGGATACACCTGCAGCAACTTTGCGGCACTTCGGCATACGACAGTAGTCTGCACATTGGGTGTCTAGCTGCTACA
TG
dot-bracket secondary structure
.............((((((((((...((((((.((((((((.(((...((...(....)....))..))).).)))))....)))))))).)))))))))
).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"
TTGATAGGACTTGATGTGGCGGTAAAGGATACACCTGCAGCAACTTTGCGGCACTTCGGCATACGACAGTAGTCTGCACATTGGGTGTCTAGCTGCTACA
TG
dot-bracket secondary structure
.............((((((((((...((((((.((((((((.(((...((...(....)....))..))).).)))))....)))))))).)))))))))
).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"
