ABOUT THIS RECORDspecies: Ciona intestinalis
miRNA family: mir-216
source: miRBase, original name: cin-mir-216 (MI0007176)
Taxonomy by NCBI:
Ciona intestinalis Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAATCTCAGCTGGCAATCTGTGA miRNA* ACGGGGCAAGATGGGATTTTG mismatches: 4 bulges: 2 |
pre-miRNA
TTACTCGAGCCTGCTTAATCTCAGCTGGCAATCTGTGATGTCATAATCATCACGGGGCAAGATGGGATTTTGCTGACTAAGGGTTTAACGACTCAGCGTA
TTAT
dot-bracket secondary structure
........((..((..(((((((.((.((...((((((((.......)))))))).)).)).)))))))..)).......(((((....))))).))...
....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"
TTACTCGAGCCTGCTTAATCTCAGCTGGCAATCTGTGATGTCATAATCATCACGGGGCAAGATGGGATTTTGCTGACTAAGGGTTTAACGACTCAGCGTA
TTAT
dot-bracket secondary structure
........((..((..(((((((.((.((...((((((((.......)))))))).)).)).)))))))..)).......(((((....))))).))...
....
SIMILARITIES| miRBase csa-mir-216a: 0.000001 PMRD no hits microPC no hits | UniProt no hits RFAM mir-216: 0.00002 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"
