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ABOUT THIS RECORD
ID:
MNEST024850
species:
Ciona intestinalis
source:
miRBase, original name:
cin-mir-217
(
MI0007177
)
Taxonomy by NCBI:
Ciona intestinalis
Ciona
Cionidae
Phlebobranchia
Enterogona
Ascidiacea
Tunicata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TACTGCATTAGGAACTGATTGG
miRNA*
AATCATATCCTTGTGCATTATATT
mismatches:
4
bulges:
2
View larger
pre-miRNA
ATAGTTGTCGTGATT
TACTGCATTAGGAACTGATTGG
TCCAAAAACCTCC
AATCATATCCTTGTGCATTATATT
TCGGGAACGACTCACTTCAAAGTTAA
ACA
dot-bracket secondary structure
..(((((((.(((..
((.(((((.((((..(((((((
...........))
)))))..)))).)))))...))..
))).).))))))..............
...
SIMILARITIES
miRBase
csa-mir-217
:
0.000005
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-217: 0.00009
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Fu X, Adamski M, Thompson EM,
Mol Biol Evol. 25:1067-1080(2008).
,
"Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"