ABOUT THIS RECORDspecies: Ciona intestinalis
miRNA family: mir-1473
source: miRBase, original name: cin-mir-1473 (MI0007129)
Taxonomy by NCBI:
Ciona intestinalis Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCAAGCTCGGGTTTATGGGTGT miRNA* ACCCACGTATTCGATCTTGCGAGAGA mismatches: 5 bulges: 4 |
pre-miRNA
GCGGCTCTGGCACCCACGTATTCGATCTTGCGAGAGATAAAGGACATCTCAAGCTCGGGTTTATGGGTGTTGGACCAAGC
dot-bracket secondary structure
..((.((..(((((((...((((((....((..(((((.......)))))..))))))))...)))))))..))))....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Hendrix D, Levine M, Shi W, Genome Biol. 11:R39(2010)., "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data"
[2] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"
GCGGCTCTGGCACCCACGTATTCGATCTTGCGAGAGATAAAGGACATCTCAAGCTCGGGTTTATGGGTGTTGGACCAAGC
dot-bracket secondary structure
..((.((..(((((((...((((((....((..(((((.......)))))..))))))))...)))))))..))))....
SIMILARITIES| miRBase csa-mir-1473: 0.0009 PMRD no hits microPC no hits | UniProt no hits RFAM mir-1473: 6e-39 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Hendrix D, Levine M, Shi W, Genome Biol. 11:R39(2010)., "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data"
[2] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"
