ABOUT THIS RECORDspecies: Ciona intestinalis
miRNA family: mir-4000
source: miRBase, original name: cin-mir-4000a-2 (MI0015504)
Taxonomy by NCBI:
Ciona intestinalis Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCCTTTTCATGTAAATTTCCAT miRNA* CGAAACTTGCGTGGAACAGGCTG mismatches: 4 bulges: 1 |
pre-miRNA
CGAAACTTGCGTGGAACAGGCTGTTAGAATCCAGCCTTTTCATGTAAATTTCCAT
dot-bracket secondary structure
.((((.((((((((((.((((((........)))))))))))))))).))))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Hendrix D, Levine M, Shi W, Genome Biol. 11:R39(2010)., "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data"
CGAAACTTGCGTGGAACAGGCTGTTAGAATCCAGCCTTTTCATGTAAATTTCCAT
dot-bracket secondary structure
.((((.((((((((((.((((((........)))))))))))))))).))))...
SIMILARITIES| miRBase cin-mir-4000a-1: 2e-25 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Hendrix D, Levine M, Shi W, Genome Biol. 11:R39(2010)., "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data"
