ABOUT THIS RECORDspecies: Ciona intestinalis
miRNA family: mir-4000
source: miRBase, original name: cin-mir-4000d (MI0015499)
Taxonomy by NCBI:
Ciona intestinalis Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAACTTGCAAGAACGGGC miRNA* CCTTTCCAACAGGTTTC mismatches: 5 bulges: 0 |
pre-miRNA
TGAAACTTGCAAGAACGGGCCTTGTTCTAACAAGTCCTTTCCAACAGGTTTC
dot-bracket secondary structure
.((((((((...(((.((((.((((....)))))))).)))...))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Hendrix D, Levine M, Shi W, Genome Biol. 11:R39(2010)., "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data"
TGAAACTTGCAAGAACGGGCCTTGTTCTAACAAGTCCTTTCCAACAGGTTTC
dot-bracket secondary structure
.((((((((...(((.((((.((((....)))))))).)))...))))))))
SIMILARITIES| miRBase cin-mir-4000d: 1e-23 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Hendrix D, Levine M, Shi W, Genome Biol. 11:R39(2010)., "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data"
