ABOUT THIS RECORDspecies: Ciona intestinalis
source: miRBase, original name: cin-mir-4000e (MI0015502)
Taxonomy by NCBI:
Ciona intestinalis Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAACTTCTTCGGAACAGG miRNA* TCTCTCGGAGGTTTCA mismatches: 3 bulges: 2 |
pre-miRNA
TGAAACTTCTTCGGAACAGGCCGGTTTAAAATCTTATCCTATATGGGCAAGGTTTCGATTTCCCGGCCTCTCTCGGAGGTTTCA
dot-bracket secondary structure
.(((((((((..(((..(((((((.(..(((((((..((.....))..)))))))..)....))))))).))).))))))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Hendrix D, Levine M, Shi W, Genome Biol. 11:R39(2010)., "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data"
TGAAACTTCTTCGGAACAGGCCGGTTTAAAATCTTATCCTATATGGGCAAGGTTTCGATTTCCCGGCCTCTCTCGGAGGTTTCA
dot-bracket secondary structure
.(((((((((..(((..(((((((.(..(((((((..((.....))..)))))))..)....))))))).))).))))))))).
SIMILARITIES| miRBase cin-mir-4000e: 2e-42 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Hendrix D, Levine M, Shi W, Genome Biol. 11:R39(2010)., "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data"
