ABOUT THIS RECORDspecies: Ciona intestinalis
source: miRBase, original name: cin-mir-4001a-2 (MI0015513)
Taxonomy by NCBI:
Ciona intestinalis Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAACTTATACGAACAGGC miRNA* CAATTCGTACAAGTTCAA mismatches: 5 bulges: 0 |
pre-miRNA
TGGAACTTATACGAACAGGCTGTGCTGTTCAGCCAATTCGTACAAGTTCAA
dot-bracket secondary structure
..((((((.((((((..(((((.......)))))..)))))).))))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Hendrix D, Levine M, Shi W, Genome Biol. 11:R39(2010)., "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data"
TGGAACTTATACGAACAGGCTGTGCTGTTCAGCCAATTCGTACAAGTTCAA
dot-bracket secondary structure
..((((((.((((((..(((((.......)))))..)))))).))))))..
SIMILARITIES| miRBase cin-mir-4001a-2: 4e-23 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: cin-mir-4002 from miRBase (MNEST024920) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Hendrix D, Levine M, Shi W, Genome Biol. 11:R39(2010)., "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data"
