ABOUT THIS RECORDspecies: Ciona intestinalis
miRNA family: mir-4003
source: miRBase, original name: cin-mir-4003b (MI0015529)
Taxonomy by NCBI:
Ciona intestinalis Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGTTGGTTATTCAATCTTGCG miRNA* CAAGATTGGTAACCAACACTAA mismatches: 4 bulges: 1 |
pre-miRNA
TGAGTTGGTTATTCAATCTTGCGATATTTAACAGTAGCAAGATTGGTAACCAACACTAA
dot-bracket secondary structure
...(((((((((.(((((((((..............)))))))))))))))))).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Hendrix D, Levine M, Shi W, Genome Biol. 11:R39(2010)., "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data"
TGAGTTGGTTATTCAATCTTGCGATATTTAACAGTAGCAAGATTGGTAACCAACACTAA
dot-bracket secondary structure
...(((((((((.(((((((((..............)))))))))))))))))).....
SIMILARITIES| miRBase cin-mir-4003b: 8e-28 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Hendrix D, Levine M, Shi W, Genome Biol. 11:R39(2010)., "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data"
