ABOUT THIS RECORDspecies: Ciona intestinalis
miRNA family: mir-4005
source: miRBase, original name: cin-mir-4005b (MI0015527)
Taxonomy by NCBI:
Ciona intestinalis Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAAGGGGAAGTACCAGCTCT miRNA* AGTTGGTGCTATCATGCTTGTG mismatches: 2 bulges: 2 |
pre-miRNA
TGAGTTGGTGCTATCATGCTTGTGTATTACGTCACAAGGGGAAGTACCAGCTCT
dot-bracket secondary structure
.(((((((((((.((.(.((((((........)))))).)))))))))))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Hendrix D, Levine M, Shi W, Genome Biol. 11:R39(2010)., "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data"
TGAGTTGGTGCTATCATGCTTGTGTATTACGTCACAAGGGGAAGTACCAGCTCT
dot-bracket secondary structure
.(((((((((((.((.(.((((((........)))))).)))))))))))))).
SIMILARITIES| miRBase cin-mir-4005b: 7e-25 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Hendrix D, Levine M, Shi W, Genome Biol. 11:R39(2010)., "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data"
