ABOUT THIS RECORDspecies: Ciona intestinalis
miRNA family: mir-4077
source: miRBase, original name: cin-mir-4077c (MI0015630)
Taxonomy by NCBI:
Ciona intestinalis Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGTTGGAAGTTGATTGACT miRNA* TTAATTGACTCCAACTA mismatches: 3 bulges: 1 |
pre-miRNA
AAGTTGGAAGTTGATTGACTGGGTTTGAAATATACCAGTTAATTGACTCCAACTA
dot-bracket secondary structure
.(((((((.((..(((((((((............)))))))))..))))))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Hendrix D, Levine M, Shi W, Genome Biol. 11:R39(2010)., "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data"
AAGTTGGAAGTTGATTGACTGGGTTTGAAATATACCAGTTAATTGACTCCAACTA
dot-bracket secondary structure
.(((((((.((..(((((((((............)))))))))..))))))))).
SIMILARITIES| miRBase cin-mir-4077a: 7e-19 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Hendrix D, Levine M, Shi W, Genome Biol. 11:R39(2010)., "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data"
