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ABOUT THIS RECORD

ID: MNEST025135
species: Ciona intestinalis
miRNA family: miR-4087
source: miRBase, original name: cin-mir-4087 (MI0015640)

Taxonomy by NCBI:
Ciona intestinalis Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCATTTCCTCACCAATTATGT

miRNA*
ATAACGTGGATGTGGACTTGATA

mismatches: 4
bulges: 2

View larger
pre-miRNA
TCATTTCCTCACCAATTATGTATTGCAAAAGCATAACGTGGATGTGGACTTGATA

dot-bracket secondary structure
(((..(((.(((((.((((((.........))))))..))).)).)))..)))..


SIMILARITIES
miRBase cin-mir-4087: 2e-25

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references

[1] Hendrix D, Levine M, Shi W, Genome Biol. 11:R39(2010)., "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data"




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