ABOUT THIS RECORDspecies: Ciona savignyi
miRNA family: let-7
source: miRBase, original name: csa-let-7d (MI0007185)
Taxonomy by NCBI:
Ciona savignyi Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGGTAGTTGGTTGTATTGTT miRNA* CTATACAGCCAGCTAACTTTACT mismatches: 1 bulges: 1 |
pre-miRNA
GAGGCTATTCACAGATGAGGTAGTTGGTTGTATTGTTTTACACCTTCGGCGATAACTATACAGCCAGCTAACTTTACTGTGGTTGCTAAATATCGTCCAG
CA
dot-bracket secondary structure
..(((...((((((.((((((((((((((((((.(((...(.((...)).)..))).)))))))))))).))))))))))))..))).............
..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"
GAGGCTATTCACAGATGAGGTAGTTGGTTGTATTGTTTTACACCTTCGGCGATAACTATACAGCCAGCTAACTTTACTGTGGTTGCTAAATATCGTCCAG
CA
dot-bracket secondary structure
..(((...((((((.((((((((((((((((((.(((...(.((...)).)..))).)))))))))))).))))))))))))..))).............
..
SIMILARITIES| miRBase cin-let-7d: 0.000005 PMRD no hits microPC no hits | UniProt no hits RFAM let-7: 5e-34 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"
