ABOUT THIS RECORDspecies: Ciona savignyi
miRNA family: mir-153
source: miRBase, original name: csa-mir-153 (MI0007197)
Taxonomy by NCBI:
Ciona savignyi Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGCATAGTAATAAAAGTGATC miRNA* CATTTTAATACTATGCAGCT mismatches: 3 bulges: 1 |
pre-miRNA
GGAAAACATTGTCTTTACTGTTCACGAGTGTCATTTTAATACTATGCAGCTTTGAATAATGTTAGTTGCATAGTAATAAAAGTGATCATGCGTTTACAAG
AA
dot-bracket secondary structure
..................(((..(((.((((((((((..((((((((((((............))))))))))))...))))))).))).)))..)))..
..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"
GGAAAACATTGTCTTTACTGTTCACGAGTGTCATTTTAATACTATGCAGCTTTGAATAATGTTAGTTGCATAGTAATAAAAGTGATCATGCGTTTACAAG
AA
dot-bracket secondary structure
..................(((..(((.((((((((((..((((((((((((............))))))))))))...))))))).))).)))..)))..
..
SIMILARITIES| miRBase cin-mir-153: 0.000000005 PMRD no hits microPC no hits | UniProt no hits RFAM mir-153: 3e-41 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"
