ABOUT THIS RECORDspecies: Ciona savignyi
miRNA family: mir-183
source: miRBase, original name: csa-mir-183 (MI0007199)
Taxonomy by NCBI:
Ciona savignyi Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATGGCACTAGTAGAAATCACTG miRNA* GTGGTTTCACAGGTGCCATAAA mismatches: 1 bulges: 1 |
pre-miRNA
ACAGTGTTGACGAAATATGGCACTAGTAGAAATCACTGTAGCCAACACCCAGTGGTTTCACAGGTGCCATAAATTGGAAACACTACTTTCTACAGCGATA
ACA
dot-bracket secondary structure
..((((((..(((..(((((((((.((.((((((((((...........)))))))))))).)))))))))..)))..))))))................
...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"
ACAGTGTTGACGAAATATGGCACTAGTAGAAATCACTGTAGCCAACACCCAGTGGTTTCACAGGTGCCATAAATTGGAAACACTACTTTCTACAGCGATA
ACA
dot-bracket secondary structure
..((((((..(((..(((((((((.((.((((((((((...........)))))))))))).)))))))))..)))..))))))................
...
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM mir-183: 9e-48 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"
