ABOUT THIS RECORDspecies: Ciona savignyi
miRNA family: mir-1497
source: miRBase, original name: csa-mir-1497 (MI0007132)
Taxonomy by NCBI:
Ciona savignyi Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAAGAATTGCAGGTGGTAGGT miRNA* AACCTCTTGTAAATCTCCAACA mismatches: 6 bulges: 0 |
pre-miRNA
ACCATCAGGCTGGTATAAGCGTAACCTCTTGTAAATCTCCAACACTAAGCTTGGTTACAGCTCTGTTGAAGAATTGCAGGTGGTAGGTGCTATCCATGCA
TTA
dot-bracket secondary structure
........(((((.(((.(((..(((.(((((((.(((.(((((...((((.(....))))).))))).))).))))))).)))...))))))))).)).
...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"
ACCATCAGGCTGGTATAAGCGTAACCTCTTGTAAATCTCCAACACTAAGCTTGGTTACAGCTCTGTTGAAGAATTGCAGGTGGTAGGTGCTATCCATGCA
TTA
dot-bracket secondary structure
........(((((.(((.(((..(((.(((((((.(((.(((((...((((.(....))))).))))).))).))))))).)))...))))))))).)).
...
SIMILARITIES| miRBase cin-mir-1497: 0.000000005 PMRD no hits microPC no hits | UniProt no hits RFAM mir-1497: 1e-34 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"
