ABOUT THIS RECORDspecies: Petromyzon marinus
miRNA family: mir-1
source: miRBase, original name: pma-mir-1a (MI0016999)
Taxonomy by NCBI:
Petromyzon marinus Petromyzon Petromyzontidae Petromyzontiformes Hyperoartia Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAATGTAAAGAAGTACGTTG miRNA* ATGTGCCTCTTTACGTCCCCATA mismatches: 2 bulges: 1 |
pre-miRNA
TTCGGCTGAGGCAATGTGCCTCTTTACGTCCCCATACGCAGCTCTGAGTCTATGGAATGTAAAGAAGTACGTTGCTTCTGCGGAG
dot-bracket secondary structure
.((.((.((((((((((((.(((((((((..(((((.((........)).))))).))))))))).)))))))))))).)).)).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ, Proc Natl Acad Sci U S A. 107:19379-19383(2010)., "microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate"
TTCGGCTGAGGCAATGTGCCTCTTTACGTCCCCATACGCAGCTCTGAGTCTATGGAATGTAAAGAAGTACGTTGCTTCTGCGGAG
dot-bracket secondary structure
.((.((.((((((((((((.(((((((((..(((((.((........)).))))).))))))))).)))))))))))).)).)).
SIMILARITIES| miRBase gga-mir-1a-1: 0.00006 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ, Proc Natl Acad Sci U S A. 107:19379-19383(2010)., "microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate"
