ABOUT THIS RECORDspecies: Petromyzon marinus
source: miRBase, original name: pma-mir-22b (MI0017025)
Taxonomy by NCBI:
Petromyzon marinus Petromyzon Petromyzontidae Petromyzontiformes Hyperoartia Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGCTGCCAGTTGAAGAGCTGA miRNA* CGCTCTCCACCGGCAGGTCTTTA mismatches: 5 bulges: 3 |
pre-miRNA
CCTACACGCGCTCTCCACCGGCAGGTCTTTACGTCGCTTCTCTCGAGAGCCTAAAGCTGCCAGTTGAAGAGCTGAGGTCGCC
dot-bracket secondary structure
)........((((((.((.(((((..(((((....(((.((....))))).)))))))))).)).).)))))..........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ, Proc Natl Acad Sci U S A. 107:19379-19383(2010)., "microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate"
CCTACACGCGCTCTCCACCGGCAGGTCTTTACGTCGCTTCTCTCGAGAGCCTAAAGCTGCCAGTTGAAGAGCTGAGGTCGCC
dot-bracket secondary structure
)........((((((.((.(((((..(((((....(((.((....))))).)))))))))).)).).)))))..........
SIMILARITIES| miRBase fru-mir-22b: 9.0E-7 PMRD no hits microPC no hits | UniProt no hits RFAM 2mir-22: 2.0E-5 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ, Proc Natl Acad Sci U S A. 107:19379-19383(2010)., "microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate"
