ABOUT THIS RECORDspecies: Petromyzon marinus
miRNA family: mir-30
source: miRBase, original name: pma-mir-30b (MI0017040)
Taxonomy by NCBI:
Petromyzon marinus Petromyzon Petromyzontidae Petromyzontiformes Hyperoartia Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTAAACATCCCTGACTGGAAGCT miRNA* CTTTCGCCCGGATGTTTGCTGC mismatches: 4 bulges: 2 |
pre-miRNA
ATGGACAGGGTGGGAGCTGTAAACATCCCTGACTGGAAGCTGGGAGCACTTGCTGCGGCAGCTTTCGCCCGGATGTTTGCTGCTGCCATCTGTCAA
dot-bracket secondary structure
)..((((((.(((.(((.((((((((((.....((((((((((.(((....))).)..)))))))))...)))))))))).))).)))))))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ, Proc Natl Acad Sci U S A. 107:19379-19383(2010)., "microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate"
ATGGACAGGGTGGGAGCTGTAAACATCCCTGACTGGAAGCTGGGAGCACTTGCTGCGGCAGCTTTCGCCCGGATGTTTGCTGCTGCCATCTGTCAA
dot-bracket secondary structure
)..((((((.(((.(((.((((((((((.....((((((((((.(((....))).)..)))))))))...)))))))))).))).)))))))))..
SIMILARITIES| miRBase pma-mir-30d: 4.0E-6 PMRD no hits microPC no hits | UniProt no hits RFAM 0mir-30: 2.0E-5 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ, Proc Natl Acad Sci U S A. 107:19379-19383(2010)., "microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate"
