ABOUT THIS RECORDspecies: Petromyzon marinus
miRNA family: mir-137
source: miRBase, original name: pma-mir-137-2 (MI0017074)
Taxonomy by NCBI:
Petromyzon marinus Petromyzon Petromyzontidae Petromyzontiformes Hyperoartia Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTATTGCTTAAGAATACACGTAG miRNA* ACGGGTATTCTTGGGTATATA mismatches: 3 bulges: 2 |
pre-miRNA
GGTGCCTCCCGCGGCCACGGGTATTCTTGGGTATATAATACAGATTGCGTTGTTATTGCTTAAGAATACACGTAGCCGCGGCGGGCCGC
dot-bracket secondary structure
.(.((((.(((((((.(((.(((((((((((((.((((..(.....)..))))...))))))))))))).))).))))))).)))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ, Proc Natl Acad Sci U S A. 107:19379-19383(2010)., "microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate"
GGTGCCTCCCGCGGCCACGGGTATTCTTGGGTATATAATACAGATTGCGTTGTTATTGCTTAAGAATACACGTAGCCGCGGCGGGCCGC
dot-bracket secondary structure
.(.((((.(((((((.(((.(((((((((((((.((((..(.....)..))))...))))))))))))).))).))))))).)))))..
SIMILARITIES| miRBase xtr-mir-137-1: 0.000000000000001 PMRD no hits microPC no hits | UniProt no hits RFAM mir-137: 4e-19 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ, Proc Natl Acad Sci U S A. 107:19379-19383(2010)., "microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate"
