ABOUT THIS RECORDspecies: Petromyzon marinus
miRNA family: mir-148
source: miRBase, original name: pma-mir-152b (MI0017084)
Taxonomy by NCBI:
Petromyzon marinus Petromyzon Petromyzontidae Petromyzontiformes Hyperoartia Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCAGTGCAAAACAGAACTTTG miRNA* AAGTTCTGTGATACACTTGGGCT mismatches: 4 bulges: 2 |
pre-miRNA
CCAGGCTTTCGAGCCGAAGTTCTGTGATACACTTGGGCTGTGCTGTCAAGGAAGTCAGTGCAAAACAGAACTTTGGTTGGAGAGCCGCG
dot-bracket secondary structure
...(((((((.((((((((((((((....((((..((((...((.....)).))))))))....)))))))))))))).)))))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ, Proc Natl Acad Sci U S A. 107:19379-19383(2010)., "microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate"
CCAGGCTTTCGAGCCGAAGTTCTGTGATACACTTGGGCTGTGCTGTCAAGGAAGTCAGTGCAAAACAGAACTTTGGTTGGAGAGCCGCG
dot-bracket secondary structure
...(((((((.((((((((((((((....((((..((((...((.....)).))))))))....)))))))))))))).)))))))...
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM mir-148: 0.000005 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ, Proc Natl Acad Sci U S A. 107:19379-19383(2010)., "microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate"
