ABOUT THIS RECORDspecies: Petromyzon marinus
miRNA family: mir-218
source: miRBase, original name: pma-mir-218a-2 (MI0017116)
Taxonomy by NCBI:
Petromyzon marinus Petromyzon Petromyzontidae Petromyzontiformes Hyperoartia Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGTGCTTGATCTAACCATGTG miRNA* CATGGTTCCTTCAAGCACCAGG mismatches: 5 bulges: 0 |
pre-miRNA
GCGTCGCTTTCCCTTGTGCTTGATCTAACCATGTGCTTGCCGCGCTCAAGACAAAACAAAACATGGTTCCTTCAAGCACCAGGGAAGGCCACG
dot-bracket secondary structure
)(((.(((((((((.((((((((...((((((((.((((.......))))..........))))))))...)))))))).))))))))).)))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ, Proc Natl Acad Sci U S A. 107:19379-19383(2010)., "microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate"
GCGTCGCTTTCCCTTGTGCTTGATCTAACCATGTGCTTGCCGCGCTCAAGACAAAACAAAACATGGTTCCTTCAAGCACCAGGGAAGGCCACG
dot-bracket secondary structure
)(((.(((((((((.((((((((...((((((((.((((.......))))..........))))))))...)))))))).))))))))).)))
SIMILARITIES| miRBase mmu-mir-218-1: 2.0E-8 PMRD no hits microPC no hits | UniProt no hits RFAM 8mir-218: 3.0E-7 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ, Proc Natl Acad Sci U S A. 107:19379-19383(2010)., "microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate"
