ABOUT THIS RECORDspecies: Xenopus laevis
miRNA family: mir-1
source: miRBase, original name: xla-mir-1b (MI0008372)
Taxonomy by NCBI:
Xenopus laevis Xenopus Xenopus Xenopodinae Pipidae Pipoidea Mesobatrachia Anura Batrachia Amphibia Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAATGTTAAGAAGTATGTA miRNA* CATACTTCTTTATATGCCCATA mismatches: 4 bulges: 1 |
pre-miRNA
CATACTTCTTTATATGCCCATACTGAATGCCAATGCTATGGAATGTTAAGAAGTATGTA
dot-bracket secondary structure
((((((((((.((((..((((((...........).))))).)))).))))))))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Biasci D, Giudetti G, Barsacchi G, Andreazzoli M, Unpublished (2008).,
CATACTTCTTTATATGCCCATACTGAATGCCAATGCTATGGAATGTTAAGAAGTATGTA
dot-bracket secondary structure
((((((((((.((((..((((((...........).))))).)))).))))))))))..
SIMILARITIES| miRBase xtr-mir-1b: 5e-23 PMRD no hits microPC no hits | UniProt no hits RFAM mir-1: 9e-22 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Biasci D, Giudetti G, Barsacchi G, Andreazzoli M, Unpublished (2008).,
