ABOUT THIS RECORDspecies: Xenopus laevis
miRNA family: mir-19
source: miRBase, original name: xla-mir-19b (MI0001452)
Taxonomy by NCBI:
Xenopus laevis Xenopus Xenopus Xenopodinae Pipidae Pipoidea Mesobatrachia Anura Batrachia Amphibia Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGCAAATCCATGCAAAACTGA miRNA* AGTTTAGCTGGTTTGCATCAGC mismatches: 1 bulges: 3 |
pre-miRNA
GCTCCTGTCAGTTTAGCTGGTTTGCATCAGCTGGCTACTGTGCTGTGCAAATCCATGCAAAACTGACTGTGGC
dot-bracket secondary structure
((..(.((((((((.(((((((((((.((((..((....)))))))))))).))).)).)))))))).)..))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Watanabe T, Takeda A, Mise K, Okuno T, Suzuki T, Minami N, Imai H, FEBS Lett. 579:318-324(2005)., "Stage-specific expression of microRNAs during Xenopus development"
GCTCCTGTCAGTTTAGCTGGTTTGCATCAGCTGGCTACTGTGCTGTGCAAATCCATGCAAAACTGACTGTGGC
dot-bracket secondary structure
((..(.((((((((.(((((((((((.((((..((....)))))))))))).))).)).)))))))).)..))
SIMILARITIES| miRBase xtr-mir-19b-1: 3e-31 PMRD no hits microPC no hits | UniProt no hits RFAM mir-19: 0.00000000002 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Watanabe T, Takeda A, Mise K, Okuno T, Suzuki T, Minami N, Imai H, FEBS Lett. 579:318-324(2005)., "Stage-specific expression of microRNAs during Xenopus development"
