ABOUT THIS RECORDspecies: Xenopus laevis
miRNA family: mir-17
source: miRBase, original name: xla-mir-20 (MI0001453)
Taxonomy by NCBI:
Xenopus laevis Xenopus Xenopus Xenopodinae Pipidae Pipoidea Mesobatrachia Anura Batrachia Amphibia Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAAAGTGCTCATAGTGCAGGTAG miRNA* ACTGTAATATGGGCACTTACAG mismatches: 3 bulges: 1 |
pre-miRNA
GCAGTTCCAAAGTGCTCATAGTGCAGGTAGTTGTATTCATGTTCTACTGTAATATGGGCACTTACAGTACTGCT
dot-bracket secondary structure
(((((....(((((((((((.(((((.(((.((....))....)))))))).))))))))))).....))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Watanabe T, Takeda A, Mise K, Okuno T, Suzuki T, Minami N, Imai H, FEBS Lett. 579:318-324(2005)., "Stage-specific expression of microRNAs during Xenopus development"
GCAGTTCCAAAGTGCTCATAGTGCAGGTAGTTGTATTCATGTTCTACTGTAATATGGGCACTTACAGTACTGCT
dot-bracket secondary structure
(((((....(((((((((((.(((((.(((.((....))....)))))))).))))))))))).....))))).
SIMILARITIES| miRBase xtr-mir-20b: 3e-34 PMRD no hits microPC no hits | UniProt no hits RFAM mir-17: 0.00000000000007 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Watanabe T, Takeda A, Mise K, Okuno T, Suzuki T, Minami N, Imai H, FEBS Lett. 579:318-324(2005)., "Stage-specific expression of microRNAs during Xenopus development"
