ABOUT THIS RECORDspecies: Xenopus laevis
miRNA family: mir-133
source: miRBase, original name: xla-mir-133d (MI0008376)
Taxonomy by NCBI:
Xenopus laevis Xenopus Xenopus Xenopodinae Pipidae Pipoidea Mesobatrachia Anura Batrachia Amphibia Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGTCCCCTTCAACCAGCCGC miRNA* GCTGGTGAAAAGGAACCACAT mismatches: 3 bulges: 3 |
pre-miRNA
CTGGTTGCGCTGGTGAAAAGGAACCACATCAACCCAGCAAAAGGATTTGGTCCCCTTCAACCAGCCGCAACTGGC
dot-bracket secondary structure
(..((((((((((((((..(((.(((.(((.............))).))))))..))).))))).))))))..).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Biasci D, Giudetti G, Barsacchi G, Andreazzoli M, Unpublished (2008).,
CTGGTTGCGCTGGTGAAAAGGAACCACATCAACCCAGCAAAAGGATTTGGTCCCCTTCAACCAGCCGCAACTGGC
dot-bracket secondary structure
(..((((((((((((((..(((.(((.(((.............))).))))))..))).))))).))))))..).
SIMILARITIES| miRBase xtr-mir-133d: 5e-30 PMRD no hits microPC no hits | UniProt no hits RFAM mir-133: 0.000004 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Biasci D, Giudetti G, Barsacchi G, Andreazzoli M, Unpublished (2008).,
