ABOUT THIS RECORDspecies: Xenopus laevis
miRNA family: mir-194
source: miRBase, original name: xla-mir-194 (MI0008379)
Taxonomy by NCBI:
Xenopus laevis Xenopus Xenopus Xenopodinae Pipidae Pipoidea Mesobatrachia Anura Batrachia Amphibia Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTAACAGCAACTCCATGTGGA miRNA* CAGTGGAGATGCTGTTACTTT mismatches: 2 bulges: 1 |
pre-miRNA
TAGTGTGTATCGGGTGTAACAGCAACTCCATGTGGACTTGTCCTTTTCCAGTGGAGATGCTGTTACTTTTGATGGATCA
dot-bracket secondary structure
....((.(((((((.(((((((((.((((((.((((..........)))))))))).))))))))).))))))).))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Biasci D, Giudetti G, Barsacchi G, Andreazzoli M, Unpublished (2008).,
TAGTGTGTATCGGGTGTAACAGCAACTCCATGTGGACTTGTCCTTTTCCAGTGGAGATGCTGTTACTTTTGATGGATCA
dot-bracket secondary structure
....((.(((((((.(((((((((.((((((.((((..........)))))))))).))))))))).))))))).))..
SIMILARITIES| miRBase xtr-mir-194-1: 3e-28 PMRD no hits microPC no hits | UniProt no hits RFAM mir-194: 0.00000000000007 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Biasci D, Giudetti G, Barsacchi G, Andreazzoli M, Unpublished (2008).,
