ABOUT THIS RECORDspecies: Xenopus laevis
miRNA family: mir-427
source: miRBase, original name: xla-mir-427 (MI0001449)
Taxonomy by NCBI:
Xenopus laevis Xenopus Xenopus Xenopodinae Pipidae Pipoidea Mesobatrachia Anura Batrachia Amphibia Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAAGTGCTTTCTGTTTTGGGCG miRNA* CCCAAAACGGGGCTCTCTCT mismatches: 3 bulges: 2 |
pre-miRNA
AGCACCCAAAACGGGGCTCTCTCTTGTGACTGAATTATGATGAGAAAGTGCTTTCTGTTTTGGGCGTT
dot-bracket secondary structure
(((.(((((((((((((.((.(((..(.(........).)..))).)).)))..)))))))))).)))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Watanabe T, Takeda A, Mise K, Okuno T, Suzuki T, Minami N, Imai H, FEBS Lett. 579:318-324(2005)., "Stage-specific expression of microRNAs during Xenopus development"
AGCACCCAAAACGGGGCTCTCTCTTGTGACTGAATTATGATGAGAAAGTGCTTTCTGTTTTGGGCGTT
dot-bracket secondary structure
(((.(((((((((((((.((.(((..(.(........).)..))).)).)))..)))))))))).)))
SIMILARITIES| miRBase xtr-mir-427-1: 6e-26 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Watanabe T, Takeda A, Mise K, Okuno T, Suzuki T, Minami N, Imai H, FEBS Lett. 579:318-324(2005)., "Stage-specific expression of microRNAs during Xenopus development"
