ABOUT THIS RECORDspecies: Xenopus tropicalis
miRNA family: let-7
source: miRBase, original name: xtr-let-7c (MI0004886)
SEQUENCE & STRUCTURE| miRNA TGAGGTAGTAGGTTGTATGGTT miRNA* CTGTACAACCTTCTAGCTTTCC mismatches: 4 bulges: 0 |
pre-miRNA
TGTGTGCATCCAGGTTGAGGTAGTAGGTTGTATGGTTTAGAATGACACCCTGGGAGTTAACTGTACAACCTTCTAGCTTTCCTTGGAGCTCACT
dot-bracket secondary structure
.(((.((.((((((..(((.(((.((((((((((((......((((.((...)).)))))))))))))))).))).)))..)))))))).))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
references
[1] Tang GQ, Maxwell ES, Genome Res. 18:104-112(2008)., "Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation"
TGTGTGCATCCAGGTTGAGGTAGTAGGTTGTATGGTTTAGAATGACACCCTGGGAGTTAACTGTACAACCTTCTAGCTTTCCTTGGAGCTCACT
dot-bracket secondary structure
.(((.((.((((((..(((.(((.((((((((((((......((((.((...)).)))))))))))))))).))).)))..)))))))).))).
SIMILARITIES| miRBase mmu-let-7c-1: 7e-39 PMRD no hits microPC no hits | UniProt no hits RFAM let-7: 3e-32 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
references
[1] Tang GQ, Maxwell ES, Genome Res. 18:104-112(2008)., "Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation"
